Cold Sore Virus: 3D Hijack & Weak Spot Found

by Grace Chen

BARCELONA, June 21, 2025

Cold Sore Virus Remodels DNA

Scientists have discovered that the herpes simplex virus-1 (HSV-1) strategically reshapes the human genome, perhaps offering a new target for antiviral therapies.

  • HSV-1 alters the human genome’s architecture to access host genes.
  • The virus’s manipulation of the genome begins within the first hour of infection.
  • Blocking a specific host enzyme can halt the virus’s ability to rearrange the genome.

A new study reveals that the cold sore virus, HSV-1, doesn’t just invade cells; it’s an interior decorator, remodeling the human genome to its advantage. Researchers at the Center for Genomic Regulation (CRG) in Barcelona have found that this sneaky virus reshapes the human genome in three-dimensional space, giving it access to the host’s resources for reproduction.

Genome Remodeling: Think of it like rearranging furniture in your house, but on a microscopic scale within your cells!

“HSV-1 is an opportunistic interior designer, reshaping the human genome with great precision and choosing which bits it comes into contact with. It’s a novel mechanism of manipulation we didn’t know the virus had to exploit host resources,” says Dr. Esther González Almela, first author of the study.

The study is the first to prove that HSV-1 deliberately reshapes the human genome within hours of infection. While other herpes viruses have been seen compacting and reshaping host chromosomes, it was unclear whether it was a side effect.

Key Finding: HSV-1 actively reshapes the host genome, not just passively alters it.

Crucially, the research found that blocking a single host enzyme, topoisomerase I, stopped HSV-1’s ability to rearrange the human genome during infection. This discovery could lead to a new strategy to control a virus that infects nearly four billion people worldwide.

“In cell culture, inhibiting this enzyme stopped the infection before the virus could make a single new particle,” says ICREA Research Professor Pia Cosma, corresponding author of the study at the Center for Genomic Regulation (CRG) in Barcelona. “That gives us a potential new therapeutic target to stop infection.”

How the virus Works

Researchers used super-resolution microscopy, which can see structures 20 nanometers wide, and Hi-C, a technique revealing which bits of DNA are touching inside the nucleus, to understand how HSV-1 hijacks human cells.

hi-C Technique: Imagine mapping all the connections within a city to understand its infrastructure. Hi-C dose this for DNA inside a cell!

The hostile takeover starts quickly, within the first hour. The virus hijacks the human RNA-polymerase II enzyme to synthesize its own proteins. Topoisomerase I, an enzyme that releases stress on DNA, and cohesin, a structural protein, also joined in the viral replication compartments.

After three hours, most of the polymerase and a notable portion of the other two factors had abandoned human genes. This causes a collapse in transcription across the host genome. Chromatin,the human genome’s natural state inside cells,was then crushed into a dense shell,shrinking to just 30% of its original size.

Dr. Álvaro Castells García, co-first author of the study, noted, “We always thought dense chromatin shut genes down but here we see the opposite: stop enough transcription first and the DNA compacts afterwards. The relationship between activity and structure might be a two-way street.”

The Impact of HSV-1

did you know? Two out of every three people under 50 have HSV-1.

HSV-1 infection is lifelong, though most cases are asymptomatic or cause cold sores. Rarely, the virus can cause blindness or life-threatening disease in newborns and immunocompromised individuals.

The study’s findings could help address the public health challenge of HSV-1, which causes recurrent outbreaks. While treatments manage symptoms, drug-resistant strains are increasing, and there is no cure.

Beyond the Genome: The Broader Implications of HSV-1’s Remodeling

The recent findings on HSV-1’s ability to remodel the human genome open up a fascinating area of research. As we’ve seen, the virus’s impact isn’t just localized to the infection site; it has the potential to influence the entire host cell’s function. Understanding the broader implications of this genome remodeling is crucial for developing effective treatments. Furthermore, while the initial study focused on the activity within the first hours of infection, the long-term effects of this manipulation and its relationship to recurring outbreaks warrant extensive examination.

The implications of HSV-1’s genome remodeling extend into several critical areas that will drive future research:

  • Immune System Evasion: the virus’s ability to rearrange the genome might help it evade the host’s immune response. Could this remodeling alter the expression of genes involved in immune signaling, allowing the virus to “hide” from detection?
  • Latency and Reactivation: A key aspect of HSV-1 is its ability to establish a latent infection, where the virus remains dormant in nerve cells. Does the genome remodeling play a role in establishing or maintaining this latent state? Could disrupting this remodeling prevent reactivation and subsequent outbreaks?
  • Drug Resistance: As mentioned earlier,drug-resistant strains of HSV-1 are becoming more prevalent.Does the virus’s ability to remodel the genome influence the development of drug resistance? Could understanding the remodeling process help in designing drugs that specifically target resistant strains?

Scientists are now focused on understanding more of the specific mechanisms and the extent of genomic alterations caused by HSV-1. The study suggests that the virus’s actions aren’t limited to immediate replication and could have lasting consequences on cellular function. Exploring these long-term effects will be vital to preventing the virus from causing more health issues. Furthermore, this research underscores the complex interplay between viruses and their hosts.

The Next Steps: Researchers are working to identify all the genes and pathways influenced by HSV-1’s actions. This knowledge will be key to developing better therapies.

this novel study highlights the need to view HSV-1 not just as a cause of cold sores but as a complex agent that can initiate a cascade of biological changes within human cells.The discovery provides a foundation for perhaps new antiviral drugs, including targeting the host enzyme, topoisomerase I. This innovative strategy aims to stop the virus before it can reproduce. Targeting host factors like topoisomerase I may offer a way to prevent outbreaks and treat drug-resistant strains. The study’s findings signify a promising turn for novel therapies.

Practical Implications

While research is ongoing, there are some steps that people at risk can take:

  • Antiviral Medications: If you experience frequent outbreaks, talk to your doctor. Antiviral drugs can reduce the severity and frequency of symptoms.
  • Stress Management: Stress can trigger outbreaks. Practice relaxation techniques such as meditation or yoga.
  • Immune Support: A healthy immune system can definitely help control the virus. Prioritize a balanced diet, regular exercise, and adequate sleep.
  • Protection: Avoid close contact with people who have active cold sores to reduce your risk of infection.

Myths vs. Facts

Let’s clear up some common misconceptions:

Myth Fact
You can catch HSV-1 from sharing a drink with someone. HSV-1 is typically spread through direct contact with a cold sore or saliva.
Cold sores are only a cosmetic issue. In rare cases, HSV-1 can cause serious health problems, such as eye infections or encephalitis.
There is no way to fight HSV-1. Antiviral medications can help reduce the frequency and severity of outbreaks. Research is constantly advancing.

frequently Asked Questions

Can HSV-1 be cured?

Currently, there is no cure for HSV-1.Once infected, the virus remains in the body for life. However, antiviral medications can manage symptoms and reduce the frequency of outbreaks.

Are cold sores contagious?

Yes,cold sores are contagious. The virus spreads through direct contact with a cold sore or saliva, wich is why it is vital to avoid contact during outbreaks.

how long do cold sores last?

The average cold sore lasts for about two weeks. With antiviral medication, healing can be accelerated.

can HSV-1 cause other health problems?

While cold sores are the most common symptom, HSV-1 can cause more severe complications on rare occasions, such as eye infections or encephalitis, especially in immunocompromised individuals.